New 60,000 points offer. Terms apply.

50,000 Bonus Miles! 2x Miles on All Spending, $95 Annual Fee waived, TSA PreCheck Credit.

Being the second-largest city in California, San Diego has a vibrant economy and an incredible atmosphere. It has great weather year-round, perfect for visiting its beautiful beaches. Commerce thrives in the city because of its harbor, which is excellent for trade and shipping, because of its reputation as a center for the advancement of biotechnology. Below are the best bookkeeping services in San Diego, California.

Tip: In our experience, online bookkeeping is the way to go for business owners. With reputable companies like Bench, you can offload so much in a few simple clicks.  Simplify, simplify, simplify. And there’s a free trial!
See more here: Bench
best bookkeeping service in san diego
What is the best bookkeeping service in San Diego?

With so much happening in this city, it’s no wonder why its local residents find keeping books on their businesses challenging. To help you make the right choice for your small business bookkeeping, we have compiled a list of both online and top local San Diego Bookkeepers.

If you’re wondering if you need a bookkeeper, know that they can help you manage much of your business.

The Best Bookkeeping Service in San Diego: Virtual Bookkeepers

If you plan to do your books online and are looking for an affordable option, a virtual bookkeeper might be a good option for you. Online services are unique because they allow clients to securely upload company transactional data to their platform, and from there, numbers are crunched, and reports are compiled.

While there are options like Quickbooks, having someone who understands the numbers and system can be massively helpful.

There isn’t one ‘Best Online Bookkeeping Service for 2019’ since all of the following are great options. However, many of the following did make our best online bookkeepers list:


America’s largest virtual bookkeeping service for small businesses, Bench has an easy to use interface that helps clients keep their finances in check. They also offer interactive reports, an on the go mobile app, and personalized support within one business day. Many small business owners take advantage of Bench’s free trial offer and remain a customer for the long haul.


inDinero is all about growth! Offering cloud-based solution scales, this virtual bookkeeping program is run by a team of Certified Public Accountants. This gives clients a mixture of flexible, real-time accounting with personalized service. inDinero also offers tax solutions.

This makes it one of the best virtual bookkeepers for San Diego’s small businesses.


From payroll services to financial planning and investment, this best bookkeeping service’s client center features a personal approach and allows clients to manage all facets of the company’s finances. Bookkeeper.com touts that they ‘provide the same level of service online that you would receive sitting in our office’ and ‘utilize the most secure methods in transmitting your private information.

Bookkeeper 360

Offering lots of different payment options, one of the perks of Bookkeeper 360 is that its mobile app is both innovative and affordable. It provides every service small businesses could need, including payroll, tax preparation, and bookkeeping. San Diego small business owners can even receive a free consultation if interested.

Go Local: The 5 Best Bookkeeping Service in San Diego

It was difficult to combine this list of amazing San Diego Bookkeepers into just five! To do so, we examined factors many that business owners look for in when deciding on the best bookkeeping service. Reputation, pricing, service options, and availability were all considered.

Here is our list of the best bookkeepers in San Diego, California.

Best Bookkeeping Service in San Diego: Downtown Area

Merritt Bookkeeping

Timely and accurate, Merritt Bookkeeping is a firm talented enough to correct even the most distorted financial record. Customers say they enjoy every interaction with the staff, and the low price coupled with increased tax savings does wonders for the clients they manage.

Phone: (619) 357-6616

Website: https://www.merrittbookkeeping.com

Best Bookkeeping Service in San Diego: Normal Heights Area

Yellowbird Accounting

Yellowbird has earned a reputation for being diligent and precise, with a history of correcting books anywhere from 2 to 10 years old. Many businesses have sought their services and come out with their finances in order, and their businesses have experienced growth as they had never seen before.

Phone: (619) 880-0716

Website: https://www.yellowbirdaccounting.com

Best Bookkeeping Service in San Diego: East Village Area

Buck Stops Here Accounting

The staff’s focused and organized style have made Buck Stops Here Accounting one of the best bookkeeping and accounting firms in San Diego. After only a few consultations, customers leave with a better knowledge of how to manage their finances and set up their businesses to their advantage.

Phone: (310) 654-2047

Website: https://www.bshaccounting.com

Best Bookkeeping Service in San Diego: Kearny Mesa Area

Hoffman & Associates

Hoffman & Associates are dedicated to their clients and put in the extra work necessary to ensure satisfaction. One client even received help with selling their home to improve their personal financial situation. Known for being kind, direct, and helpful, you can be sure that Hoffman & Associates will give you useful information that you can use right now to help your business succeed.

Phone: (858) 576-1122

Website: https://www.hoffmantaxesandaccounting.com

Best Bookkeeping Service in San Diego: Ocean Beach Area

Bookkeeping in the Sun

Fitting for the beach environment, Bookkeeping in the Sun takes an otherwise boring part of business and makes it into a relaxed, easy process. Timely, friendly, and honest, the staff is very helpful and can tackle even the most difficult accounting challenges.

Phone: (619) 750-6771

Website: https://www.bookkeepinginthesun.com

Although the San Diego area covers a lot of ground, these five bookkeeping services represent some of the best that San Diego has to offer. However, a local bookkeeping service might not be the right fit for every business. This is why we provided online Bookkeeping service options. Online service providers offer all of the same features you receive locally along with many other perks like Smartphone Apps as well as real-time reporting.

City Spotlight

It’s no surprise that the proclaimed “Birthplace of California” is the economic center of the region. Filled with diverse people and sporting a rich, unique culture, tourists and residents alike can’t wait to get a taste of the authentic San Diego experience.

Small and local businesses are what set cities apart, and San Diego is no exception to this rule. Such a large and diverse client base can make keeping track of money challenges. The bookkeeping specialists listed above are committed to helping you do just that.

Contact an accounting or bookkeeping specialist today. This can not only ensure that your business survives but also thrives. And, it may leave its unique mark on the city of San Diego.

Tip: In our experience, online bookkeeping is the way to go for business owners. With reputable companies like Bench, you can offload so much in a few simple clicks.  Simplify, simplify, simplify. And there’s a free trial!
See more here: Bench
Johnny Jet Editorial